Caveat: Taxes?

I just had forwarded to me (from my dad) a tax bill from the State of Minnesota for $666.  Aside from the incredibly (in-)auspicious dollar amount that I owe them, I am highly disturbed because of the fact that I thought I had resolved my 2006 tax issues with my accountant almost 6 months ago – what the heck is going on?

I will undoubtedly pay it.  But this is causing me some discomfort with my accountant, as he'd told me it was all automated payments – somehow I'd assumed the federal refund and state tax bills had cancelled out (approximately) and that the difference had been absorbed in the bill I receieved from him last October. My question is, if I still owe Minnesota this amount, where did my federal refund go? 

To summarize: argh.

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